2022

6 articles already in 2022!



198. Kasimatis CN, Psomakelis E, Katsenios N, Katsenios G, Papatheodorou M, Vlachakis D, Apostolou D, Efthimiadou A Implementation of a decision support system for prediction of the total soluble solids of industrial tomato using machine learning models Computers and Electronics in Agriculture Volume 193, 2022, 106688, ISSN 0168-1699,https://doi.org/10.1016/j.compag.2022.106688.

197. Vila IK, Chamma H, Steer A, Saccas M, Taffoni C, Turtoi E, Reinert LS, Hussain S, Marines J, Jin L, Bonnefont X, Hubert M, Schwartz O, Paludan SR, Van Simaeys G, Doumont G, Sobhian B, Vlachakis D, Turtoi A, Laguette N. Sting orchestrates the crosstalk between polyunsaturated fatty acids metabolism and inflammatory responses Cell Metabolism 2022 Jan 4;34(1):125-139.e8. doi: 10.1016/j.cmet.2021.12.007. PMID: 34986331; PMCID: PMC8733004.

196. Mavroeidi P, Arvanitaki F, Vetsi M, Becker S, Vlachakis D, Jensen PH, Stefanis L, Xilouri M. Autophagy Mediates the Clearance of Oligodendroglial alpha-Synuclein and TPPP/P25A in Multiple System Atrophy Models Autophagy 2022 Jan 9:1-30. doi: 10.1080/15548627.2021.2016256. Epub ahead of print. PMID: 35000546.

195. Efthymiou V, Charmandari E, Vlachakis D, Tsitsika A, Pałasz A, Chrousos G, Bacopoulou F. Adolescent self-efficacy for diet and exercise following a school-based multicomponent intervention Nutrients 2021 2022 Dec 27;14(1):97. doi: 10.3390/nu14010097. PMID: 35010972; PMCID: PMC8746524.

194. Papageorgiou L, Alkenaris H, Zervou MI, Vlachakis D, Matalliotakis I, Spandidos DA, Bertsias G, Goulielmos GN, Eliopoulos E. Epione application: An integrated web‐toolkit of clinical genomics and personalized medicine in systemic lupus erythematosus International Journal Molecular Medicine 2022, 48, 8. https://doi.org/10.3892/ijmm.2021.5063

193. 193. Toumba M, Fanis P, Vlachakis D, Neocleous V, Phylachtou LA, Skordis N, Mantzoros CS, Pantelidou M. Molecular modelling of novel ADCY3 variant predicts a molecular target for tackling obesity International Journal Molecular Medicine 2022, 49, 10. https://doi.org/10.3892/ijmm.2021.5065

2021

60 articles in 2021



192. Vlachakis D, Papakonstantinou E, Sagar R, Bacopoulou F, Exarchos T, Kourouthanassis P, Karyotis V, Vlamos P, Lyketsos C, Avramopoulos D, Mahairaki V. Improving the Utility of Polygenic Risk Scores as a Biomarker for Alzheimer’s Disease Cells 2021; 10(7):1627. https://doi.org/10.3390/cells10071627

191. Vlachakis D Genetic and structural analyses of ssRNA viruses pave the way for the discovery of novel antiviral pharmacological targets Royal Society of Chemistry; Molecular Omics 2021,17, 357-364 https://doi.org/10.1039/D0MO00173B

190. Katsenios N, Andreou V, Sparangis P, Djordjevic N, Giannoglou M, Chanioti S, Stergiou P, Xanthou MZ, Kakabouki I, Vlachakis D, Djordjevic S, Katsaros G, Efthimiadou A. Evaluation of plant growth promoting bacteria strains on growth, yield and quality of industrial tomato Microorganisms 2021; 9(10):2099. https://doi.org/10.3390/microorganisms9102099

189. Neocleous V, Fanis P, Toumba M, Gorka B, Kousiappa I, Tanteles GA, Iasonides M, Nicolaides NC, Christou YP, Michailidou K, Nicolaou S, Papacostas SS, Christoforidis A, Kyriakou A, Vlachakis D, Skordis N and Phylactou LA. Pathogenic and Low-Frequency Variants in Children With Central Precocious Puberty Front. Endocrinol. 2021; 12:745048. doi: 10.3389/fendo.2021.745048

188. Gintoni I, Vassiliou S, Avgoustidis D, Adamopoulou M, Zavras N, Papakosta V, Vlachakis D, Yapijakis C Lack of Association Between the ACE2 G8790A Gene Variation and Risk for Basal Cell Carcinoma. Anticancer Res. 2021 Aug;41(8):4021-4026. doi: 10.21873/anticanres.15201. PMID: 34281868

187. Mentis AF, Vlachakis D, Papakonstantinou E, Zaganas I, Patrinos GP, Chrousos GP, Dardiotis E. A novel variant in DYNC1H1 could contribute to human amyotrophic lateral sclerosis-frontotemporal dementia spectrum. Cold Spring Harb Mol Case Stud 2021 Sep 17:mcs.a006096. doi: 10.1101/mcs.a006096. Epub ahead of print. PMID: 34535505.

186. Katsenios N, Christopoulos MV, Kakabouki I, Vlachakis D, Kavvadias V, Efthimiadou A. Effect of Pulsed Electromagnetic Field on Growth, Physiology and Postharvest Quality of Kale (Brassica oleracea), Wheat (Triticum durum) and Spinach (Spinacia oleracea) Microgreens. Agronomy 2021; 11(7):1364. https://doi.org/10.3390/agronomy11071364

185. Mourtzi N, Siahanidou T, Tsifintaris M, Karamichali E, Tasiopoulou A, Sertedaki A, Pesmatzoglou M, Kapetanaki A, Liosis G, Vlachakis D, Chrousos GP, Giannakakis A LncRNA NORAD is consistently detected in breastmilk exosomes and downregulated in mothers of preterm infants International Journal Molecular Medicine 2021, 48:216. https://doi.org/10.3892/ijmm.2021.5049

184. Leptidis S, Papakonstantinou E, Diakou KI, Pierouli K, Mitsis T, Dragoumani K, Bacopoulou F, Sanoudou D, Chrousos GP, Vlachakis D Epitranscriptomics of Cardiovascular Diseases International Journal of Molecular Medicine 2021, 49, 9. DOI: 10.3892/ijmm.2021.5064

183. Papakonstantinou E, Dragoumani K, Efthimiadou A, Palaiogeorgou AM, Pierouli K, Mitsis T, Chrousos GP, Bacopoulou F, Vlachakis D Haematological malignancies implications during the times of the COVID-19 pandemic (Review) Oncology Letters 2021, 22, 856. DOI: 10.3892/ol.2021.13117

182. Papageorgiou L, Andreou A, Christoforides E, Vlachakis D, Thireou T, Eliopoulos E Hippo(crates): An integrated atlas for natural product exploration through a state of the art pipeline in Chemoinformatics World Academy of Sciences Journal 2021, 4, 1. DOI: 10.3892/wasj.2021.136

181. Papageorgiou L, Shalzi L, Pierouli K, Papakonstantinou E, Manias S, Dragoumani K, Nicolaides NC, Giannakakis A, Bacopoulou F, Chrousos GP, Eliopoulos E, Vlachakis D An updated evolutionary study of the nuclear receptor protein family. World Academy of Sciences Journal 2021, 3, 51. https://doi.org/10.3892/wasj.2021.122

180. Papakonstantinou E, Mitsis T, Dragoumani K, Efthimiadou A, Bacopoulou F, Chrousos GP, Eliopoulos E, Vlachakis D Materials of biological origin and biofuels: Small environmental footprint and epigenetic impact (Review) International Journal of Epigenetics 2021, 1, 8. https://doi.org/10.3892/ije.2021.8

179. Papakonstantinou E, Pierouli K, Mitsis T, Diakou KI, Palaiogeorgou AM, Bacopoulou F, Chrousos GP, Eliopoulos E, Vlachakis D COVID‑19 global social lockdowns: Energy‑related, psychological, epigenetic, health and environmental impacts (Review) International Journal of Epigenetics 2021, 1, 6. https://doi.org/10.3892/ije.2021.6

178. Golfinopoulou R, Papageorgiou L, Efthimiadou A, Bacopoulou F, Chrousos GP, Eliopoulos E, Vlachakis D Clinical Genomics, phenotypes and epigenetic insights into the pathology, autoimmunity and weight management in Myasthenia Gravis Molecular Medicine Reports 2021, 24, 512. https://doi.org/10.3892/mmr.2021.12151

177. Papakonstantinou E, Vlachakis D, Thireou T, Vlachoyiannopoulos PG, Eliopoulos E A holistic evolutionary and 3D pharmacophore modelling study provides insights into the metabolism, function and substrate selectivity of the human monocarboxylate transporter 4 (hMCT4) International Journal of Molecular Sciences 2021, 22(6), 2918; https://doi.org/10.3390/ijms22062918

176. Papageorgiou L, Zervou MI, Vlachakis D, Mataliotakis M, Mataliotakis I, Spandidos DA, Goulielmos GN, Eliopoulos E Demetra Application: An integrated genotype analysis web server for clinical genomics in endometriosis International Journal of Molecular Medicine 2021, 47, 115. https://doi.org/10.3892/ijmm.2021.4948

175. Papageorgiou L, Shalzi L, Efthimiadou A, Bacopoulou F, Chrousos GP, Eliopoulos E, Vlachakis D Conserved functional motifs in the nuclear receptor family reveals novel pharmacological targets International Journal of Epigenetics 2021, 1, 3. https://doi.org/10.3892/ije.2021.

174. Katsenios Ν, Sparangis P, Leonidakis D, Katsaros G, Kakabouki I, Vlachakis D, Efthimiadou A Effect of Genotype × Environment Interaction on Yield of Maize Hybrids in Greece Using AMMI Analysis Agronomy 2021;11(3):479

173. Vlachakis D, Chrousos GP, Eliopoulos E On the origins of life; a molecular and a cellular journey driven by genetropy International Journal of Epigenetics 2021, 1, 7. https://doi.org/10.3892/ije.2021.7

172. Diakou KI, Mitsis T, Pierouli K, Papakonstantinou E, Megalooikonomou V, Efthimiadou A, Vlachakis D Study of the Langat virus RNA-dependent RNA polymerase through homology modeling. EMBnet Journal 2021;26:e944

171. Triantakonstantis D, Detsikas S, Kavvadias V, Papadopoulou Z, Sparangis P, Katsenios N, Vlachakis D, Efthimiadou A. Land Suitability Assessment for Olive Mill Wastewater Disposal by Integrating Multicriteria Decision Support Tools EMBnet Journal 2021;26:e947

170. Kallianta MD, Katsira C, Tsitsika A, Vlachakis D, Chrousos GP, Darviri C, Bacopoulou F. Stress management intervention to enhance adolescent resilience: a randomized controlled trial EMBnet Journal 2021;26:e967

169. Voulgari F, Bacopoulou F, Artemiadis A, Kokka I, Vlachakis D, Tigani X, Chrousos GP, Darviri C. Pythagorean Self Awareness Intervention in Caregivers of Patients with Motor Disabilities EMBnet Journal 2021;26:e970

168. Kallianta A, Bacopoulou F, Vlachakis D, Kokka I, Chrousos GP, Darviri C. Validation of the Cosmetic Procedure Screening (COPS) Questionnaire in the Greek language EMBnet Journal 2021;26:e971

167. Zarenti M, Bacopoulou F, Michou M, Kokka I, Vlachakis D, Chrousos GP, Darviri C. Validation of the Instagram Addiction Scale in Greek Youth EMBnet Journal 2021;26:e973

166. Panagiotou M, Charalampopoulou M, Bacopoulou F, Velegraki IM, Kokka I, Vlachakis D, Chrousos GP, Darviri C. Reliability and validity of the Peer Relation Questionnaire in a sample of Greek school children and adolescents EMBnet Journal 2021;26:e974

165. Sofianopoulou K, Bacopoulou F, Vlachakis D, Kokka I, Alexopoulos E, Varvogli L, Chrousos GP, Darviri C. Stress Management in Elementary School Students: A Pilot Randomized Controlled Trial EMBnet Journal 2021;26:e976

164. Aivali P, Efthymiou V, Tsitsika AK, Vlachakis D, Chrousos GP, Kanaka‑Gantenbein C, Bacopoulou FValidation of the Greek version of the Problematic Internet Use Questionnaire - Short Form (PIUQ-SF-6) EMBnet Journal 2021;26:e978

163. Angelopoulou A, Vlachakis D, Chrousos GP, Cosmidis N, Yapijakis C Clinical and molecular study of common thrombophilia mutation prothrombin G20210A. Adv Exp Med Biol 2021, Accepted. In Press

162. Mavrea K, Efthymiou V, Katsibardi K, Antoniou AS, Vlachakis D, Chrousos GP, Kattamis A, Bacopoulou F. Cognitive effects of children and adolescents survivors of acute lymphoblastic leukaemia: A meta-analysis. Adv Exp Med Biol 2021, Accepted. In Press

161. Gorgili K, Artemiadis A, Bacopoulou F, Karatzas P, Tigani X, Vlachakis D, Kokka I, Varvogli L, Chrousos GP, Darviri C. The Effects of Pythagorean Self Awareness Intervention on irritable bowel syndrome patients. An experimental study. Adv Exp Med Biol 2021, Accepted. In Press

160. Seliniotaki T, Koumarianou A, Bacopoulou F, Vlachakis D, Chrousos GP, Darviri C. Event-Related Rumination Inventory: A Validation Process in the Greek Language. Adv Exp Med Biol 2021, Accepted. In Press

159. Kokka I, Mourikis I, Bacopoulou F, Michou M, Vlachakis D, Darviri C, Zervas I, Kanaka-Gantenbein C. Validation of the Greek Version of Social Media Disorder Scale. Adv Exp Med Biol 2021, Accepted. In Press

158. Koumantarou Malisiova E, Mourikis I, Darviri C, Michou M, Provi K, Vlachakis D, Bacopoulou F, Papageorgiou C, Chrousos GP. Validation of the Greek Version of Hedonic, Eudaimonic and Extrinsic Motives for Activities (HEEMA) Instrument. Adv Exp Med Biol 2021, Accepted. In Press

157. Psarraki EE, Bacopoulou F, Vlachakis D, Chrousos GP, Michou M, Pelekasis P, Stavrianou N, Darviri C. The Kentucky Inventory of Mindfulness Skills in Greek Undergraduate and Postgraduate Students. Adv Exp Med Biol 2021, Accepted. In Press

156. Diakou KI, Mitsis T, Pierouli K, Papakonstantinou E, Bongcam-Rudloff E, Wayengera M, Vlachakis D. Ebola virus disease and current therapeutic strategies; a review. Adv Exp Med Biol 2021, Accepted. In Press

155. Kourakou A, Tigani X, Bacopoulou F, Vlachakis D, Papakonstantinou E, Simidala S, Ktena E, Katsaouni S, Chrousos GP, Darviri C. The Rosenberg Self-Esteem Scale: Translation and Validation in the Greek Language in Adolescents. Adv Exp Med Biol 2021, Accepted. In Press

154. Markousis-Mavrogenis G, Bacopoulou F, Vlachakis D, Mavrogeni S. Tissue characterization in Cardiology. Moving beyond function. Adv Exp Med Biol 2021, Accepted. In Press

153. Miskedaki A, Vagiakis E, Bacopoulou F, Vlachakis D, Artemiadis A, Chrousos GP, Darviri C. The role of Pythagorean Self-Awareness Intervention in obstructive sleep apnea. A randomized controlled trial. Adv Exp Med Biol 2021, Accepted. In Press

152. Miskedaki A, Bacopoulou F, Vlachakis D, Artemiadis A, Chrousos GP, Darviri C. Validation of the STOP-Bang Questionnaire in Greek patients suffering from obstructive sleep apnea. Adv Exp Med Biol 2021, Accepted. In Press

151. Seliniotaki T, Bacopoulou F, Vlachakis D, Artemiadis A, Kampoli K, Chrousos GP, Darviri C, Koumarianou A. Effects of an 8-Week Stress Management Program in Women with Breast Cancer: A Randomized Controlled Trial. Adv Exp Med Biol 2021, Accepted. In Press

150. Papakonstantinou E, Mitsis T, Dragoumani K, Bacopoulou F, Megalooikonomou V, Chrousos GP, Vlachakis D The medical cyborg concept EMBnet Journal 2021, Accepted. In Press

149. Papakonstantinou E, Diakou KI, Mitsis T, Dragoumani K, Bacopoulou F, Megalooikonomou V, Kossida S, Chrousos GP, Vlachakis D Molecular fusion events in carcinogenic organisms: a bioinformatics study for the detection of fused proteins between viruses, bacteria and eukaryotes EMBnet Journal 2021, Accepted. In Press

148. Vlachakis D, Efthimiadou A SOILomics; where Microbiome Genetics meets Precision Agriculture EMBnet Journal 2021, Accepted. In Press

147. Zarenti M, Kressou E, Panagopoulou Z, Bacopoulou F, Kokka I, Vlachakis D, Chrousos GP, Darviri C. Stress among pediatric oncology staff. A literature review EMBnet Journal 2021, Accepted. In Press

146. Efthymiou V, Kotsikogianni D, Tsitsika A, Vlachakis D, Chrousos GP, Charmandari E, Bacopoulou F. Validation of the Greek version of the Adolescent Sleep Hygiene Scale (ASHS) EMBnet Journal 2021, Accepted. In Press

145. Papadimitriou K, Koumoulidis D, Papalamprou L, Kasimatis C, Sparangis P, Katsenios N, Megalooikonomou V, Vlachakis D, Triantakonstantis D, Efthimiadou A. Environmental impacts of wars-Social consequences. Case Study: Aleppo Governorate Syria EMBnet Journal 2021, Accepted. In Press

144. Exarchopoulou K, Papageorgiou A, Bacopoulou F, Koumantarou Malisiova E, Vlachakis D, Chrousos GP, Darviri C. A Biofeedback-Assisted Stress Management Program for Patients with Irritable Bowel Syndrome: A Randomized Controlled Trial EMBnet Journal 2021, Accepted. In Press

143. Dadiotis A, Bacopoulou F, Kokka I, Vlachakis D, Chrousos GP, Darviri C, Roussos P. Validation of the Greek version of the Bergen Social Media Addiction Scale in Undergraduate Students EMBnet Journal 2021, Accepted. In Press

142. Louvardi M, Pelekasis P, Bacopoulou F, Vlachakis D, Chrousos GP, Darviri C. Studying Depression, Anxiety, Distress and Somatization in a Community Sample of 2.425 Adults in Greece EMBnet Journal 2021, Accepted. In Press

141. Guerra J , Valadao AL, Vlachakis D, Polak K, Vila IK, Taffoni C, Prabakaran T, Marriott AS, Kaczmarek R, Houel A, Auzemery B, Déjardin S, Boudinot P, Nawrot B, Jones NJ, Paludan SR, Kossida S, Langevin C, Laguette N. Lysyl-tRNA synthetase produces diadenosine tetraphosphate to curb STING-dependent inflammation. Science Advances. 2020, (3) 10; e1700495, DOI: 10.1126/sciadv.1700495

140. Naseem M, Othman EM, Fathy M, Iqbal J, Howari FM, AlRemeithi FA, Kodandaraman G, Stopper H, Bencurova E, Vlachakis D, Dandekar T. Integrated structural and functional analysis of the protective effects of kinetin against oxidative stress in mammalian cellular systems. Nature Sci Rep 2020 Aug 7;10(1):13330

139. Vila IK, Fretaud M, Vlachakis D, Laguette N, Langevin C. Animal Models for the Study of Nucleic Acid Immunity: Novel Tools and New Perspectives. Journal of Molecular Biology 2020 Sep 18;432(20):5529-5543. doi: 10.1016/j.jmb.2020.08.016

138. Vlachakis D, Mitsis T, Nicolaides N, Efthimiadou A, Giannakakis A, Bacopoulou F, Chrousos GP Exosomal Endocrinology: Functions, Pathophysiology, and Current Insights Molecular Medicine Reports 2021;23(1):26. doi: 10.3892/mmr.2020.11664.

137. Georgakis N, Poudel N, Vlachakis D, Papageorgiou AC, Labrou NE. Phi class glutathione transferases as molecular targets towards multiple-herbicide resistance: Inhibition analysis and pharmacophore design Plant Physiol Biochem 2020 Nov 17;S0981-9428(20)30569-6. doi: 10.1016/j.plaphy.2020.11.018

136. Vlachakis D, Papageorgiou L, Papadaki A, Georga M, Kossida S, Eliopoulos E. An updated evolutionary study of the Notch family reveals a new ancient origin and novel invariable motifs as potential pharmacological targets PeerJ 2020 Nov 5;8:e10334. doi: 10.7717/peerj.10334

135. Moreno-Indias I, Lahti L, Nedyalkova M, Elbere I, Roshchupkin GV, Adilovic M, Aydemir O, Bakir-Gungor B, Carrillo-de Santa Pau E, D'Elia1 D, Desai1 MS, Falquet L, Gundogdu A, Hron1 K, Klammsteiner T, Lopes MB, Marcos Zambrano LJ, Marques C, Mason M, May P, Pašić L, Pio G, Pongor S, Promponas VJ, Przymus P, Sáez-Rodríguez J, Sampri A, Shigdel R, Stres B, Suharoschi R, Truu J, Octavian Truică C, Vilne B, Vlachakis D, Yılmaz E, Zeller G, Zomer A, Gómez-Cabrero D, Claesson M. Statistical and machine learning techniques in human microbiome studies: contemporary challenges and solutions Frontiers in Microbiology 2021, 12:635781. doi: 10.3389/fmicb.2021.635781

134. Vlachakis D, Vlamos P. Mathematical multidimensional modelling and structural artificial intelligence pipelines provide insights for the designing of highly specific antiSARS-CoV2 agents Math Comp Sci 2021, https://doi.org/10.1007/s11786-021-00517-0

133. Vlachakis D, Chrousos GP Epigenetics International Journal of Epigenetics 2021, 1, 1. https://doi.org/10.3892/ije.2020.1

2020

25 articles in 2020

132. Vlachakis D Introducing Drugonfly; A Novel Computer-Aided Drug Repurposing Pipeline Based on Genomic, Structural and Physicochemical Profiles. Brain Function Assessment in Learning. BFAL 2020. Lecture Notes in Computer Science Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2020, 12462 LNAI, pp. 113-121

131. Vlachakis D. Antibody clustering and 3D modelling for neurodegenerative diseases. Handbook of Computational Neurodegeneration. Springer Nature, Cham. https://doi.org/10.1007/978-3-319-75479-6_53-1

130. Neocleous V, Fanis P, Toumba M, Tanteles GA, Schiza M, Cinarli F, Nicolaides NC, Oulas A, Spyrou GM, Mantzoros CS, Vlachakis D, Skordis N, Phylactou LA. GnRH Deficient Patients With Congenital Hypogonadotropic Hypogonadism: Novel Genetic Findings in ANOS1, RNF216, WDR11, FGFR1, CHD7, and POLR3A Genes in a Case Series and Review of the Literature. Frontiers in Endocrinology (Lausanne) 2020 Aug 28;11:626. doi: 10.3389/fendo.2020.00626. eCollection 2020.

129. Mitsis T, Pierouli K, Diakou KL, Papakonstantinou E, Bacopoulou F, Chrousos GP, Vlachakis D. Exosomics EMBnet J 2020;26:e934

128. Vlachakis D, Papakonstantinou E, Mitsis T, Pierouli K, Diakou I, Chrousos GP, Bacopoulou F. Molecular mechanisms of the novel coronavirus SARS-CoV-2 and potential anti-COVID19 pharmacological targets since the outbreak of the pandemic Food Chem Toxicol 2020, 2020 Dec;146:111805. doi.org/10.1016/j.fct.2020.111805

127. Beta RAA, Kyritsisa A, Douka V, Papanastasi Ea, Rizouli M, Leonidas DD, Vlachakis D, Balatsos NAA Biochemical and in silico studies for the identification of the active site and the catalytic mechanism of the circadian deadenylase HESPERIN FEBS Open Bio 2020 Oct 23. doi: 10.1002/2211-5463.13011

126. Premetis G, Marugas P, Fanos G, Vlachakis D, Chronopoulou EG, Perperopoulou F, Dubey KK, Shukla P, Foudah AI, Muharram MM, Aldwsari MF, Papageorgiou AC, Labrou NE. The Interaction of the Microtubule Targeting Anticancer Drug Colchicine with Human Glutathione Transferases. Curr Pharm Des 2020 Jul 24. doi: 10.2174/1381612826666200724154711. Online ahead of print.

125. Bacopoulou F, Landis GN, Pałasz A, Tsitsika A, Vlachakis D, Tsarouhas K, Tsitsimpikou C, Stefanaki C, Kouretas D, Efthymiou V. Identifying early abdominal obesity risk in adolescents by telemedicine: A cross-sectional study in Greece. Food Chem Toxicol 2020 Oct;144:111532.

124. Platis M, Vlachakis D, Foudah AI, Muharram MM, Alqarni MH, Papageorgiou AC, Labrou NE. The interaction of Schistosoma japonicum glutathione transferase with Cibacron blue 3GA and its fragments. Med Chem. 2020, 16:1, doi: 10.2174/1573406416666200403074742

123. Vlachakis D, Papakonstantinou E, Efthimiadou A, Bacopoulou F, Goulielmos G, Chrousos GP, Eliopoulos E. Ancestral cancer genes shaping evo-devo; an integrated biochemical and computational study. World Academy of Sciences Journal. 2020, 2(7), 1-8. doi:10.3892/wasj.2020.48

122. Raftopoulou S, Nicolaides NC, Papageorgiou L, Amfilochiou A, Zakinthinos SG, Potamitis G, Eliopoulos E, Chrousos GP, Vlachakis D. Structural study of the DNA – Clock/Bmal1 complex provides insights for the role of cortisol, hGR and HPA axis in stress management and sleep disorders. Adv Exp Med Biol. 2020;1195:59-71. doi:10.1007/978-3-030-32633-3_10.

121. Papageorgiou L, Maroulis D, Chrousos GP, Eliopoulos E, Vlachakis D. Antibody clustering using a machine learning pipeline that fuses genetic, structural and physicochemical properties. Adv Exp Med Biol. 2020;1194:41-58. doi:10.1007/978-3-030-32622-7_4

120. Papageorgiou L, Papakostantinou E, Salis C, Polychronidou E, Hagidimitriou M, Maroulis D, Eliopoulos E, Vlachakis D. Drugena: A fully automated immunoinformatics platform for the design of antibody drug conjugates against neurodegenerative diseases. Adv Exp Med Biol. 2020;1194:203-215. doi:10.1007/978-3-030-32622-7_18.

119. Koumandou VL, Papageorgiou L, Tsaniras SC, Papathanassopoulou A, Hagidimitriou M, Cosmidis N, Vlachakis D. Microbiome hijacking towards an integrative pest management pipeline. Adv Exp Med Biol. 2020;1195:21-32. doi:10.1007/978-3-030-32633-3_4

118. Salis C, Papageorgiou L, Papakostantinou E, Hagidimitriou M, Vlachakis D. Olive Oil Polyphenols in Neurodegenerative Pathologies. Adv Exp Med Biol. 2020;1195:77-91. doi:10.1007/978-3-030-32633-3_12.

117. Papakonstantinou E, Megalooikonomou V, Vlachakis D. Dark Suite; a comprehensive toolbox for computer-aided drug design. EMBnet Journal. 2020;25:e928. doi:10.14806/ej.25.0.928

116. Papakonstantinou E, Bacopoulou F, Megalooikonomou V, Efthimiadou A, Vlachakis D. An in silico and in vitro pipeline for the rapid screening of helicase modulators. EMBnet Journal. 2020;25:e927. doi:10.14806/ej.25.0.927

115. Mitsis A, Papageorgiou L, Efthimiadou A, Bacopoulou F, Vlachakis D, Chrousos GP, Eliopoulos E. A comprehensive structural and functional analysis of the Ligand Binding Domain of the Nuclear Receptor Superfamily shows highly conserved signaling motifs and two distinct canonical forms through evolution. World Academy of Sciences Journal. 2020; 1(6), 264-274 https://doi.org/10.3892/wasj.2020.30

114. Mitsis A, Papageorgiou L, Efthimiadou A, Bacopoulou F, Vlachakis D, Chrousos GP, Eliopoulos E. Transcription Factors and Evolution: An integral part of gene expression. World Academy of Sciences Journal. 2020, 2(1), 3-8 https://doi.org/10.3892/wasj.2020.32

113. Tsekouras V, Mavrikou S, Vlachakis D, Makridakis M, Stroggilos R, Zoidakis J, Termentzi A, Moschopoulou G, Kintzios S. Proteome analysis of leaf, stem and callus in Viscum album and identification of lectins and viscotoxins with bioactive properties. Plant Cell Tiss Organ Cult 141, 167–178 (2020). https://doi.org/10.1007/s11240-020-01777-7

112. Emmanouil C, Bacopoulou F, Vlachakis D, Chrousos GP, Darviri CValidation of the Stress in Children (SiC) Questionnaire in a Sample of Greek Pupils Journal of Molecular Biochemistry. 2020 (9);1, 74-79

111. Charalampopoulou M, Syrigos K, Filopoulos E, Megalooikonomou V, Vlachakis D, Chrousos GP, Darviri C. Reliability and validity of the instrument Newly Diagnosed Breast Cancer Stress Scale in the Greek population. Journal of Molecular Biochemistry. 2020 (9);1, 5-12

110. Sioula EK, Tigani X, Artemiadis A, Vlachakis D, Chrousos GP, Darviri C, Alexopoulos EC. An 8-week stress management program in information technology professionals and the role of a new cognitive behavioral method: A pilot randomized controlled trial. Journal of Molecular Biochemistry. 2020 (9);1, 22-31

109. Zigkiri E, Nicolaides N, Bacopoulou F, Simos D, Vlachakis D, Chrousos GP, Darviri C. Τhe Effect of the Pythagorean Self-Awareness Intervention on Psychological, Lifestyle and Cognitive Measures of a Community Sample. Journal of Molecular Biochemistry. 2020 (9);1, 32-40

108. Kalogiratou DS, Bacopoulou F, Kanaka-Gantenbein C, Tigani X, Gerakini O, Vlachakis D, Chrousos GP, Darviri C. Effects of a cognitive stress management program-Pythagorean Self Awareness-on childhood emotional eating and psychological wellbeing. A pragmatic trial. Journal of Molecular Biochemistry. 2020 (9);1, 13-21

2019

10 articles in 2019

107. Tsaniras SC, Delinasios GJ, Petropoulos M, Panagopoulos A, Anagnostopoulos AK, Villiou M, Vlachakis D, Bravou V, Stathopoulos GT, Taraviras S. DNA Replication Inhibitor Geminin and Retinoic Acid Signaling Participate in Complex Interactions Associated With Pluripotency. Cancer Genomics Proteomics. 2019, 16(6):593-601.

106. Vlamos P, Kotsireas I, Vlachakis D. Complexity in Medical Informatics. 2019, Complexity, 8658124

105. Kalogiratou DS, Bacopoulou F, Kanaka-Gantenbein C, Vlachakis D, Gerakini O, Chrousos GP, Darviri C. Greek Validation of Emotional Eating Scale for Children and Adolescents. JMolBiochem. 2019 (8): 26-32

104. Markomanolaki ZS, Tigani X, Siamatras T, Bacopoulou F, Tsartsalis A, Artemiadis A, Megalooikonomou V, Vlachakis D, Chrousos GP, Darviri C. Stress Management in Women with Hashimoto’s thyroiditis: A Randomized Controlled Trial. JMolBiochem. 2019 (8): 3-12

103. Salis C, Papakonstantinou E, Pierouli K, Mitsis A, Basdeki L, Megalooikonomou V, Vlachakis D, Hagidimitriou M. A genomic data mining pipeline for 15 species of the genus Olea. EMBNet J. 2019, e922

102. Papakonstantinou E, Bacopoulou F, Brouzas D, Megalooikonomou V, D’ Elia D, Bongcam-Rudloff E, Vlachakis D. NOTCH3 and CADASIL Syndrome; a genetic and structural overview. EMBNet J. 2019, e921

101. Papakonstantinou E, Vlachakis D. State of the art immunogenetics and immunoinformatics. JMolBiochem 2019 (8): 1-2

100. Chronopoulou E, Vlachakis D, Papageorgiou A, Ataya F, Labrou NE. Structure-based design and application of an engineered glutathione transferase for the development of an optical biosensor for pesticides determination. BBA - General Subjects. 2019, 1863(3):565-576.

099. Theoharaki C, Chronopoulou E, Vlachakis D, Ataya FS, Giannopoulos P, Maurikou S, Skopelitou K, Papageorgiou AC, Labrou NE. Delineation of the functional and structural properties of the glutathione transferase family from the plant pathogen Erwinia carotovora. Funct Integr Genomics. 2019, 19(1):1-12 doi: 10.1007/s10142-018-0618-8

098. Picasi E, Kaisaridi P, Diakou I, Kaliafentakis K, Papageorgiou L, Megalooikonomou V, Vlachakis D. Insights into the mechanism of coccidiosis from Isospora Suis. Online Journal Bioinformatics. 2019, 20(1):1-8

2018

11 articles in 2018

097. Antoniou N, Vlachakis D, Memou A, Leandrou E, Valkimadi PE, Melachroinou K, Re DB, Przedborski S, Dauer WT, Stefanis L, Rideout HJ. A motif within the armadillo repeat of Parkinson’s-linked LRRK2 interacts with FADD to hijack the extrinsic death pathway. Scientific Reports (NPG). 2018 (8):3455

096. Vlachakis D, Labrou NE, Iliopoulos C, Hardy J, Lewis PA, Rideout H, Trabzuni D. Insights into the Influence of Specific Splicing Events on the Structural Organization of LRRK2. Int. J. Mol. Sci. 2018, 19(9), 2784; https://doi.org/10.3390/ijms19092784

095. Picasi E, Tartas A, Megalooikonomou V, Vlachakis D. Introducing Thetis: a comprehensive suite for event detection in molecular dynamics. Journal of Molecular Biochemistry. 2018, 7:71-77.

094. Boulaki V, Vlachakis D, Sotiraki S, Kossida S.An up-to-date review of piglet isosporosis: New insights and therapeutic perspectives. Veterinary Science: Breakthroughs in Research and Practice. 2018, Pages 116-131 ISBN: 978-152255641-1;1522556400;978-152255640-4 DOI:10.4018/978-1-5225-5640-4.ch006

093. Amidi A, Amidi S, Vlachakis D, Megalooikonomou V, Paragios N, Zacharaki EI. EnzyNet: enzyme classification using 3D convolutional neural networks on spatial representation. PeerJ. 2018, 6:e4750

092. Papageorgiou L, Picasi E, Raftopoulou S, Mantaiou M, Megalooikonomou V, Vlachakis D. Genomic Big Data Hitting The Storage Bottleneck. EMBnet Journal. 2018;24. pii: e910.

091. Kostaropoulos T, Papageorgiou L, Champeris TS, Vlachakis D, Eliopoulos E. Carcinogenic Pesticide Control via Hijacking Endosymbiosis; The Paradigm of DSB-A from Wolbachia pipientis for the Management of Otiorhynchus singularis In Vivo. 2018; 32(5):1051-1062. doi: 10.21873/invivo.11346

090. Vlachakis C, Dragoumani K, Raftopoulou S, Mantaiou M, Papageorgiou L, Champeris TS, Megalooikonomou V, Vlachakis D. Human Emotions on the Onset of Cardiovascular and Small Vessel Related Diseases. In Vivo. 2018;32(4):859-870. doi: 10.21873/invivo.11320

089. Marinou M, Platis D, Ataya FS, Chronopoulou E, Vlachakis D, Labrou NE. Structure-based design and application of a nucleotide coenzyme mimetic ligand: Application to the affinity purification of nucleotide dependent enzymes. Journal of Chromatography A. 2018 (1535):88-100

088. Bakopoulos M, Papageorgiou L, Megalooikonomou V, Vlachakis D. State of the art sensor-based wearables and nanorobotics for life sciences. Online Journal Bioinformatics. 2018, 1(19): 35-40

2017

9 articles in 2017

087. Papageorgiou L, Megalooikonomou V, Vlachakis D. Genetic and structural study of DNA-directed RNA polymerase II of Trypanosoma brucei, towards the designing of novel antiparasitic agents. PeerJ. 2017, 5:e3061

086. Papageorgiou L, Megalooikonomou V, Vlachakis D. Antisoma Application: A Fully Integrated V-Like Antibodies Platform. AIMS Medical Science, 2017, 4(4): 382-394

085. Vlachakis D. On Novel Anti-viral HIV Gene Editing Platforms. J Genet DNA Res. 2017, Editorial Article, v1:pp1

084. Vlachakis D, Zacharaki EI, Tsiamaki E, Koulouri M, Raftopoulou S, Papageorgiou L, Chrousos GP, Ellul J, Megalooikonomou V. Insights into the molecular mechanisms of stress and inflammation in ageing and frailty of the elderly. Journal of Molecular Biochemistry. 2017, 6, 41-44

083. Papageorgiou L, Vlachakis C, Dragoumani K, Raftopoulou S, Brouzas D, Nicolaides NC, Chrousos GP, Charmandari E, Megalooikonomou V, Vlachakis D. HCV genetics and genotypes dictate future antiviral strategies. Journal of Molecular Biochemistry. 2017, 6, 33-40

082. Chatzikonstantinou M, Vlachakis D, Papageorgiou L, Papageorgiou AC, Labrou NE. The Glutathione Transferase Family of Chlamydomonas reinhardtii: Identification and Characterization of Novel Sigma Class-like Enzymes. Algal Research. 2017, 24 (A): 237-250

081. Amidi S, Amidi A, Vlachakis D, Paragios N, Zacharaki EI. Automatic single- and multilabel enzymatic function prediction by machine learning. PeerJ. 2017, 5:e3095

080. Tagkalakis F, Vlachakis D, Megalooikonomou V, Skordas A. A Novel Approach to Finger Vein Authentication. ISBI. 2017:16968681

079. Vlachakis D, Armaos A, Kossida S. Advanced Protein Alignments Based on Sequence,Structure and Hydropathy Profiles; The Paradigm of the Viral Polymerase Enzyme. Math. Comput. Sci. 2017, pp. 1-12

2016

9 articles in 2016

078. Sertedaki A, Markou A, Vlachakis D, Kossida S, Campanac E, Hoffman DA, Sierra ML, Xekouki P, Stratakis CA, Kaltsas G, Piaditis GP, Chrousos GP, Charmandari E. Functional characterization of two novel germline mutations of the KCNJ5 gene in hypertensive patients without primary aldosteronism but with ACTH‐dependent aldosterone hypersecretion. Clin Endocrinol (Oxf). 2016, 86(6):845-851

077. Amidi A, Amidi S, Vlachakis D, Paragios N, Zacharaki EI. A Machine Learning Methodology for Enzyme Functional Classification Combining Structural and Protein Sequence Descriptors. Bioinformatics and Biomedical Engineering. Volume 9656 of the series Lecture Notes in Computer Science pp 728-738.

076. Tsaniras SC, Vlachakis D. HCV, Dengue, West Nile and now Zika; What’s next? The threat of endemic TBE relatives in Southern Europe. J Mol Biochem. 2016, 5(1):20.

075. Mavromati J, Hamzaraj E, Gjeta Z, Mavromati E, Vlachakis D, Kossida S, Shabani E. First Results of Proteomics Analyses in Blood Serum of Sheep in Albania. Anglisticum Journal. 2016, 2 (4): 235-240

074. Tsaniras SC, Vlachakis D. Diet, obesity and cancer. J Mol Biochem. 2015, 4(2):20.

073. Papageorgiou L, Loukatou S, Kossida S, Maroulis D, Vlachakis D. An updated evolutionary study of Flaviviridae NS3 helicase and NS5 RNA-dependent RNA polymerase, reveals novel invariable motifs as potential pharmacological targets. Royal Society Chemistry: Molecular Biosystems. 2016, 12(7):2080-93.

072. Kontopoulos DG, Vlachakis D, Tsiliki G, Kossida S. Structuprint: a scalable and extensible tool for two-dimensional representation of protein surfaces. BMC Structural Biology. 2016. 16:4.

071. Papageorgiou L, Cuong NT, Vlachakis D. Antibodies as stratagems against cancer. Royal Society Chemistry: Molecular Biosystems. 2016, 12(7):2047-55

070. Axarli I, Muleta AW, Vlachakis D, Kossida S, Kotzia G, Maltezos A, Dhavala P, Papageorgiou AC, Labrou NE. Directed Evolution of Tau Class Glutathione Transferases Reveals A Site That Regulates Catalytic Efficiency And Masks Cooperativity. Biochemical Journal. 2016, 473(5):559-70.

2015

10 articles in 2015

069. Nicolaides NC, Skyrla E, Vlachakis D, Psarra AG, Moutsatsou P, Sertedaki A, Kossida S, Charmandari E. Functional Characterization of the hGRαT556I Causing Chrousos Syndrome. European Journal of Clinical Investigation. 2015, 46(1):42-49.

068. Nicolaides NC, Geer EB, Vlachakis D, Roberts ML, Psarra AM, Moutsatsou P, Sertedaki A, Kossida S, Charmandari E. A Novel Mutation of the hGR Gene Causing Chrousos Syndrome. European Journal of Clinical Investigation. 2015, 45(8):782-791.

067. Tsaniras SC, Vlachakis D, Taraviras S: The Nucleophosmin-Pin1 interaction links the cell cycle, cancer and pluripotency. J Mol Biochem. 2015, 4(3):50-51.

066. Vlachakis D, Bencurova E, Papageorgiou L, Bhide M, Kossida S. Protein phosphorylation prediction: limitations, merits and pitfalls. J Mol Biochem. 2015, 4(2):36-41.

065. Loukatou S, Papageorgiou L, Vlachakis D. Optimisation of a potent series of HCV helicase drug candidates. J Mol Biochem. 2015, 4(1):1-4.

064. Loukatou S, Chatzinikolaou P, Vlachakis D, Kossida S. Genome-wide copy number variation from next generation sequencing data. Online Journal of bioinformatics. 2015, 16(2):254-262.

063. Bencurova E, Kovac A, Pulzova L, Gyuranecz M, Mlynarcik P, Mucha R, Vlachakis D, Kossida S, Flachbartova Z, Bhide M. Deciphering the protein interaction in adhesion of Francisella tularensis subsp. holarctica to the endothelial cells. Microbial Pathogenesis. 2015, 81:6-15.

062. Konstantara K, Danelakis A, Tzogogianni D, Polychronidou E, Venieris G, Papageorgiou L, Vlachakis D. Respiratory gating in lung cancer radiotherapy. Online Journal of bioinformatics. 2015, 16(2):194-201.

061. Polychronidou E, Vlachakis D, Papageorgiou L, Vlamos P. Biological databases as key for data integration, analysis and visualization. Online Journal of bioinformatics. 2015, 16(1):51-60.

060. Vlachakis D, Fakourelis P, Megalooikonomou V, Makris C, Kossida S. DrugOn: a fully integrated pharmacophore modelling and structure optimization toolkit, PeerJ. 2015, 13;3:e725.

2014

13 articles in 2014

059. Vlachakis D, Armaos, A., Kasampalidis, I., Filntisi, A., Kossida, S. ASSP; The antibody secondary structure profile search tool. CEUR Workshop Proceedings. 2014,(1):69-77.

058. Vlachakis D, Vlachakis D, Bencurova E, Papangelopoulos N, Kossida S. Current state of the art molecular dynamics methods and applications., Advances in Protein Chemistry and Structural Biology. 2014, 94:269–313.

057. Polychronidou E, Vlachakis D, Vlamos P, Baumann M, Kossida S. Notch Signaling and Ageing, Advances in Experimental Medicine and Biology (AEMB). 2014, 822:25-36.

056. Inturia R, Wäneskoga M, Vlachakis D, Alia Y, Eka P, Pungaa T, Bjerling P. A splice variant of the human phosphohistidine phosphatase 1 (PHPT1) is degraded by the proteasome, The International Journal of Biochemistry & Cell Biology. 2014, 57: 69–75.

055. Filntisi A, Vlachakis D, Matsopoulos G, Kossida S. Computational construction of antibody-drug conjugates using surface lysines as the antibody conjugation site and a non-cleavable linker, Cancer Informatics. 2014, 13: 179–186.

054. Papageorgiou L, Loukatou S, Koumandou VL, Makałowski W, Megalooikonomou V, Vlachakis D, Kossida S. Structural models for the design of novel antiviral agents against Greek Goat Encephalitis, PeerJ. 2014, 2:e664.

053. Vlachakis D, Champeris Tsaniras S, Ioannidou K, Papageorgiou L, Baumann M, Kossida S. A series of Notch3 mutations in CADASIL; insights from 3D molecular modelling and evolutionary analyses, J Mol Biochem. 2014, 3(3):97-105.

052. Loukatou S, Fakourelis P, Papageorgiou L, Megalooikonomou V, Kossida S, Vlachakis D. Ebola virus epidemic: a deliberate accident?, J Mol Biochem. 2014, 3(3):72-76.

051. Loukatou S, Papageorgiou L, Fakourelis P, Filntisi A, Polychronidou E, Bassis I, Megalooikonomou V, Makałowski W, Vlachakis D, Kossida S. Molecular dynamics simulations through GPU video games technologies, J Mol Biochem. 2014, 3(2):64-71.

050. Tsiliki G, Vlachakis D, Kossida S, On integrating multi-platform microarray data, Philos Trans A Math Phys Eng Sci 2014 20130136

049. Vlachakis D, Champeris Tsaniras S, Tsiliki G, Megalooikonomou V, Kossida S, 3D structural analysis of proteins using electrostatic surfaces based on image segmentation, J Mol Biochem 2014 3(1):27-33

048. Maltezos A, Platis D, Vlachakis D, Kossida S, Marinou M, Labrou NE, Design, Synthesis and Application of Benzyl-sulphonate Biomimetic Affinity Adsorbents for Monoclonal Antibody Purification from Transgenic Corn, J. Mol. Recognit. 2014 27:19-31

047. Vlachakis D, Pavlopoulou A, Roumbelakis M, Feidakis C, Anagnou N, Kossida S, Emerging pharmacological targets: An in silico study of Trypanosoma brucei DNA Topoisomerase IB, Genomics 2014 103(1):107-113

2013

26 articles in 2013

046. Dalkas G, Vlachakis D, Tsagkrasoulis D, Kastania A, Kossida S, State of the art technology in modern computer-aided drug design, Briefings in Bioinformatics 2013 14(6):745-752

045. Steinhauf D, Rodriguez A, Vlachakis D, Virgo G, Maksimov V, Kristell C, Olsson I, Linder T, Kossida S, Bongcam-Rudloff E, Bjerling P, Silencing motifs in the Clr2 protein from fission yeast, Schizosaccharomyces pombe, Plos One 2013 9(1):e86948

044. Chatzinikolaou P, Makris C, Vlachakis D, Kossida S, A benchmark of structural variant analysis tools for next generation sequencing data, International Journal of Systems Biology and Biomedical Technologies (IJSBBT) 2013 2(4):86-98

043. Filntisi A, Bencurova E, Papangelopoulos N, Vlachakis D, Kossida S, State-of-the-Art Neural Networks Applications in Biology, International Journal of Systems Biology and Biomedical Technologies (IJSBBT) 2013 2(4):63-85

042. Boulaki V, Vlachakis D, Sotiraki S, Kossida S, An up-to-date review of piglet isosporosis; new insights and therapeutic perspectives, International Journal of Systems Biology and Biomedical Technologies (IJSBBT) 2013 2(4):49-62

041. Papangelopoulos N, Vlachakis D, Filntisi A, Fakourelis P, Papageorgiou L, Megalooikonomou V, Kossida S, State of the art GPGPU applications in bioinformatics, International Journal of Systems Biology and Biomedical Technologies (IJSBBT) 2013 2(4):24-48

040. Ioannidou K, Vlachakis D, Matsopoulos G, Kastania A, Kossida S, Neuroscience and symptoms related to the CADASIL disease, International Journal of Systems Biology and Biomedical Technologies (IJSBBT) 2013 2(4):17-23

039. Papageorgiou L, Vlachakis D, Koumandou VL, Papangelopoulos N, Kossida S, Computer-aided drug design and biological evaluation of novel anti-Greek goat encephalitis agents, International Journal of Systems Biology and Biomedical Technologies (IJSBBT) 2013 2(4):1-16

038. Vlachakis D, Karozou A, Kossida S, 3D molecular modelling study of the H7N9 RNA-dependent RNA polymerase as an emerging pharmacological target, Influenza Res Treat 2013 2013:645348, 9pages

037. Filntisi A, Vlachakis D, Matsopoulos G, Kossida S, 3D structural bioinformatics of proteins and antibodies; state of the art, perspectives and challenges, International Journal of Systems Biology and Biomedical Technologies (IJSBBT) 2013 2(3):67-74

036. Vlachakis D, Champeris Tsaniras S, Kossida S, Insights into the structure and 3D spatial arrangement of the b-ketoacyl carrier protein synthases, J Mol Biochem 2013 2(3):150-158

035. Vlachakis D, Karozou A, Champeris Tsaniras S, Kossida S, An update on the virology of the H7N9 strain of the influenza A virus, International Journal of Systems Biology and Biomedical Technologies (IJSBBT) 2013 2(3):59-66

034. Pavlopoulou A, Vlachakis D*, Balatsos N, Kossida S, A comprehensive phylogenetic analysis of deadenylases, Evolutionary Bioinformatics 2013 9:491-497

033. Carvalho CS, Vlachakis D, Tsiliki G, Megalooikonomou V, Kossida S, Protein signatures using electrostatic molecular surfaces in harmonic space, PeerJ 2013 1:e185

032. Vlachakis D, Kontopoulos DG, Kossida S, Space Constrained Homology Modelling; the paradigm of the RNA-dependent RNA Polymerase of Dengue (Type II) Virus, Comput Math Methods Med 2013 2013:108910, 9 pages

031. Vlachakis D, Kossida S, Antibody Drug Conjugate Bioinformatics: Drug delivery through the letterbox, Comput Math Methods Med 2013 2013:282398, 4 pages

030. Vlachakis D, Pavlopoulou A, Kazazi D, Kossida S, Unravelling microalgal molecular interactions using evolutionary and structural bioinformatics, Gene 2013 528(2):109-119

029. Vlachakis D, Champeris Tsaniras S, Karozou A, Kossida S, An update on virology and emerging viral epidemics, J Mol Biochem 2013, 2(2):80-84

028. Vlachakis D, Kossida S, Molecular modelling and pharmacophore elucidation study of the Classical Swine Fever virus helicase as a promising pharmacological target, PeerJ 2013 1:e85

027. Vlachakis D, Champeris Tsaniras S, Feidakis C, Kossida S, An in silico 3D study of the biglycan core protein, using homology modelling techniques, J Mol Biochem 2013 2(2):85-93

026. Vlachakis D, Koumandou VL, Kossida S, A holistic evolutionary and structural study of flaviviridae provides insights into the function and inhibition of HCV Helicase, PeerJ 2013,1:e74

025. Vlachakis D, Tsiliki G, Roumbelakis MG, Pavlopoulou A, Champeris Tsaniras S, Kossida S, Antiviral stratagems against HIV using RNA interference (RNAi) technology, Evolutionary Bioinformatics 2013, 9:203-213

024. Vlachakis D, Feidakis C, Megalooikonomou V, Kossida S, IMGT/Collier-de-Perles: A two-dimensional visualization tool for amino acid domain sequences, Theor Biol Med Model 2013 21;10(1):14

023. Vlachakis D, Tsagkrasoulis D, Tsiliki G, Kossida S. The future of structural bioinformatics in the post-genomic era; a novel framework to facilitate modern drug design, EMBnet Journal 2013 2012:18(1), 3-5

022. D Vlachakis, Tsiliki G, Kossida S, 3D Molecular Modelling of the Helicase Enzyme of the Endemic, Zoonotic Greek Goat Encephalitis Virus, ISBN: 978-3-642-41012-3. 2013. Engineering Applications of Neural Networks, Communications in Computer and Information Science 383: 165-171pp.

021. D Vlachakis, Tsiliki G, Kondos D, Kontopoulos DG. Feidakis C, Kossida S, Applied bioinformatics in the structural, post-genomic era. COST Farm animal proteomics, ISBN: 978-90-8686-222-1. April 2013. pp 23-25.

2012

9 articles in 2012

020. Vlachakis D, Pavlopoulou A, Tsiliki G, Komiotis D, Stathopoulos C, Balatsos N, Kossida S, An intergraded in silico approach to design specific inhibitors targeting human poly(A)-specific ribonuclease, Plos One 2012 7(12):e51113

019. Vlachakis D, Champeris Tsaniras S, Kossida S, Current viral infections and epidemics of flaviviridae; lots of grief but also some hope, J Mol Biochem 2012 1(3):144-149

018. Vlachakis D, Tsiliki G, Tsagkrasoulis D, Carvalho CS, Megalooikonomou V, Kossida S, Speeding up the drug discovery process: structural similarity searches using molecular surfaces, EMBnet Journal. 2012, 18(1), 6-9

017. Vlachakis D, Champeris Tsaniras S, An introduction to M-theory and its application in biology, J Mol Biochem 2012 1(2):65-67

016. Kapasa M, Vlachakis D, Kostadima M, Sotiropoulou G, Kossida S, Towards the elucidation of the regulatory network guiding the insulin producing cells, Genomics. 2012, 1(2), 35-47

015. Vlachakis D, Tsagkrasoulis D, Megalooikonomou V, Kossida S, Introducing Drugster: a comprehensive drug design, lead and structure optimization toolkit, Bioinformatics. 2012, 29(1):126-8

014. Vlachakis D, Champeris Tsaniras S, The shape of science, J Mol Biochem 2012 1(1):4-5

013. Balatsos N, Vlachakis D, Chatzigeorgiou V, Manta S, Komiotis D, Vlassi M, Stathopoulos C, Kinetic and in silico analysis of the slow-binding inhibition of human poly(A)-specific ribonuclease (PARN) by novel nucleoside analogues, Biochimie 2012 94(1):214-21

012. Sellis D, Drosou V, Vlachakis D, Voukkalis N, Giannakouros T, Vlassi M, Phosphorylation of the arginine/serine repeats of lamin B receptor by SRPK1-Insights from molecular dynamics simulations, Biochim Biophys Acta (Gen. Subjects) 2012 1820(1):44-55

2010

3 articles in 2010

011. Vlachaki C, Skarlos P, Patrozou E, Vlachakis D, Mpikou K, Mperoukas K. Nutritional management of patients before, during and upon radiotherapy for pelvis tumour, H J Nutr Diet 2010 01(2):100-105

010. Vlachaki C, Karageorgou M, Karakozis S, Vlachakis D, Nutritional management after Bariatric Surgery, H J Nutr Diet 2010 01(1):29-36

009. Patrozou E, Vlachaki C, Liolia D, Vlachakis D, The role of the dietician in inflammation prevention, H J Nutr Diet 2010 01(1):37-43

2009

5 articles in 2009

008. Sellis D, Vlachakis D, Vlassi M, Gromita: A Fully Integrated Graphical User Interface to Gromacs 4, Bioinformatics and Biology Insights 2009 3:99-102

007. Vangelatos I, Vlachakis D, Sophianopoulou V, Diallinas G,Modelling and mutational evidence identify the substrate binding site and functional elements in APC amino acid transporters, Mol Membr Biol 2009 26(5):356-70

006. Vlachakis D, Theoretical study of the Usutu virus helicase 3D structure, by means of computer-aided homology modelling, Theor Biol Med Model 2009 25;6:9,1-9

005. Balatsos NA, Vlachakis D, Maragozidis P, Manta S, Anastasakis D, Kyritsis A, Vlassi M, Komiotis D,Stathopoulos C, Competitive inhibition of human poly(A)-specific ribonuclease (PARN) by synthetic fluoro-pyranosyl nucleosides, Biochemistry 2009 7;48(26):6044-6051

004. Kandil S, Biondaro S, Vlachakis D, Cummins AC, Coluccia A, Berry C, Leyssen P, Neyts J, Brancale A, Discovery of a novel HCV helicase inhibitor by a de novo drug design approach, Bioorg Med Chem Lett 2009 1;19(11):2935-7

2008

2 articles in 2008

003. Brancale A, Vlachaki C, Vlachakis D, Molecular modelling study of the 3D structure of the Bovine Viral Diarrhea Virus (BVDV) helicase, In Silico Biol 2008, 35:461-469

002. Palaiomylitou M, Tartas A, Vlachakis D, Tzamarias D, Vlassi M, Investigating the structural stability of the Tup1-interaction domain of Ssn6: evidence for a conformational change on the complex, Proteins 2008 70(1):72-82